eOn 3.2.0
Long-timescale dynamics: aKMC, NEB, parallel replica
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BiasedGradientSquaredDescent.h
Go to the documentation of this file.
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/*
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** This file is part of eOn.
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**
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** SPDX-License-Identifier: BSD-3-Clause
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**
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** Copyright (c) 2010--present, eOn Development Team
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** All rights reserved.
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**
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** Repo:
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** https://github.com/TheochemUI/eOn
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*/
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#pragma once
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#include "
EonLogger.h
"
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#include "
Eigen.h
"
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#include "
Matter.h
"
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#include "
MinModeSaddleSearch.h
"
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#include "
SaddleSearchMethod.h
"
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#include <utility>
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#include <vector>
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namespace
eonc
{
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class
BiasedGradientSquaredDescent
:
public
SaddleSearchMethod
{
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public
:
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BiasedGradientSquaredDescent
(std::shared_ptr<Matter> matterPassed,
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double
reactantEnergyPassed,
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const
Parameters
¶metersPassed)
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:
SaddleSearchMethod
(matterPassed->getPotential(), parametersPassed),
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saddle
{std::move(matterPassed)},
reactantEnergy
{reactantEnergyPassed} {
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eigenvector
.resize(
saddle
->numberOfAtoms(), 3);
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eigenvector
.setZero();
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}
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~BiasedGradientSquaredDescent
() =
default
;
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int
run
();
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double
getEigenvalue
();
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AtomMatrix
getEigenvector
();
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std::string_view
describeStatus
(
int
status
)
const override
{
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return
MinModeSaddleSearch::statusMessage
(
status
);
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}
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int
getStatus
()
const override
{
return
status
; }
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double
eigenvalue
{0.0};
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AtomMatrix
eigenvector
;
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std::shared_ptr<Matter>
saddle
;
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int
status
{0};
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private
:
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double
reactantEnergy
;
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eonc::log::Scoped
log
;
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};
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}
// namespace eonc
Eigen.h
AtomMatrix
Eigen::Matrix< double, Eigen::Dynamic, 3, eOnStorageOrder > AtomMatrix
Definition
Eigen.h:37
EonLogger.h
Matter.h
MinModeSaddleSearch.h
SaddleSearchMethod.h
eonc::BiasedGradientSquaredDescent::describeStatus
std::string_view describeStatus(int status) const override
Definition
BiasedGradientSquaredDescent.h:39
eonc::BiasedGradientSquaredDescent::~BiasedGradientSquaredDescent
~BiasedGradientSquaredDescent()=default
eonc::BiasedGradientSquaredDescent::saddle
std::shared_ptr< Matter > saddle
Definition
BiasedGradientSquaredDescent.h:47
eonc::BiasedGradientSquaredDescent::status
int status
Definition
BiasedGradientSquaredDescent.h:49
eonc::BiasedGradientSquaredDescent::eigenvector
AtomMatrix eigenvector
Definition
BiasedGradientSquaredDescent.h:45
eonc::BiasedGradientSquaredDescent::getEigenvalue
double getEigenvalue()
Definition
BiasedGradientSquaredDescent.cpp:164
eonc::BiasedGradientSquaredDescent::run
int run()
Definition
BiasedGradientSquaredDescent.cpp:103
eonc::BiasedGradientSquaredDescent::getEigenvector
AtomMatrix getEigenvector()
Definition
BiasedGradientSquaredDescent.cpp:166
eonc::BiasedGradientSquaredDescent::BiasedGradientSquaredDescent
BiasedGradientSquaredDescent(std::shared_ptr< Matter > matterPassed, double reactantEnergyPassed, const Parameters ¶metersPassed)
Definition
BiasedGradientSquaredDescent.h:26
eonc::BiasedGradientSquaredDescent::log
eonc::log::Scoped log
Definition
BiasedGradientSquaredDescent.h:53
eonc::BiasedGradientSquaredDescent::reactantEnergy
double reactantEnergy
Definition
BiasedGradientSquaredDescent.h:52
eonc::BiasedGradientSquaredDescent::eigenvalue
double eigenvalue
Definition
BiasedGradientSquaredDescent.h:44
eonc::BiasedGradientSquaredDescent::getStatus
int getStatus() const override
Definition
BiasedGradientSquaredDescent.h:42
eonc::MinModeSaddleSearch::statusMessage
static constexpr std::string_view statusMessage(int status)
Human-readable message for a status code.
Definition
MinModeSaddleSearch.h:56
eonc::Parameters
Definition
Parameters.h:35
eonc::SaddleSearchMethod::SaddleSearchMethod
SaddleSearchMethod(std::shared_ptr< Potential > potPassed, const Parameters ¶msPassed)
Definition
SaddleSearchMethod.h:27
eonc
RAII resource manager for the ARTn C library with global synchronization.
Definition
ARTnSaddleSearch.cpp:23
eonc::log::Scoped
RAII helper for class-scoped logging.
Definition
EonLogger.h:171
include
eon
BiasedGradientSquaredDescent.h
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