Morse Pt saddle search (built-in potential)¶
A small dimer saddle search on morse_pt using the geometries from
benchmarks/data/one_pt_saddle_search/. After the client finishes, plot the
trajectory with rgpycrumbs eon plt-saddle (same single-ended landscape stack
as minimization).
Setup and run¶
Profile and landscape¶
# Profile (energy / eigenvalue vs iteration when available)
out_p = plot_dir / "saddle_profile.png"
try:
run_rgpycrumbs(
"eon",
"plt-saddle",
"--job-dir",
str(work),
"--label",
"pt saddle",
"--plot-type",
"profile",
"--dpi",
"150",
"-o",
str(out_p),
)
show_plot(out_p)
except Exception as exc:
print("plt-saddle profile skipped:", exc)
out_l = plot_dir / "saddle_2d.png"
try:
run_rgpycrumbs(
"eon",
"plt-saddle",
"--job-dir",
str(work),
"--label",
"pt saddle",
"--plot-type",
"landscape",
"--project-path",
"--surface-type",
"grad_imq",
"--plot-structures",
"endpoints",
"--strip-renderer",
"xyzrender",
"--strip-dividers",
"--dpi",
"150",
"-o",
str(out_l),
)
show_plot(out_l)
except Exception as exc:
print("plt-saddle landscape skipped:", exc)
See also¶
LJ cluster minimization (built-in potential) for the shared single-ended plot conventions